Extract TF names from scRNA data and tf2motifs
Usage
get_tfs(
hummus,
assay = NULL,
store_tfs = TRUE,
output_file = NULL,
verbose = 0
)
Arguments
- output_file
(character) - Path to output file.
- verbose
(integer) - Verbosity level. Default: 1.
- species
(character) - Species name. Default: "human".
- genes
(vector(character)) - List of expressed genes.
- tf2motifs
(data.frame) - TF to motifs names mapping.
Columns: motif, tf.
Value
TFs (vector(character)) - List of TFs expressed with motifs.
